3.1. rand_wc_model_gen package

3.1.2. Submodules

3.1.3. rand_wc_model_gen.__main__ module

Command line programs for generating random whole-cell models

Author:Jonathan Karr <karr@mssm.edu>
Author:Ashwin Srinivasan <ashwins@mit.edu>
Date:2018-05-15
Copyright:2018, Karr Lab
License:MIT
class rand_wc_model_gen.__main__.AnalyzeController(*args, **kw)[source]

Bases: cement.ext.ext_argparse.ArgparseController

Analyze a random whole-cell knowledge base, model, and their simulations

class Meta[source]

Bases: object

arguments = [(['--config-path'], {'type': <class 'str'>, 'default': None, 'help': 'Path to configuration file'})][source]
description = 'Analyze a random whole-cell model and simulations'[source]
label = 'analyze'[source]
stacked_on = 'base'[source]
stacked_type = 'nested'[source]
class rand_wc_model_gen.__main__.App(label=None, **kw)[source]

Bases: cement.core.foundation.App

Command line application

results[source]

handler results

Type:object
class Meta[source]

Bases: object

base_controller = 'base'[source]
handlers = [<class 'rand_wc_model_gen.__main__.BaseController'>, <class 'rand_wc_model_gen.__main__.GenerateController'>, <class 'rand_wc_model_gen.__main__.SimulateController'>, <class 'rand_wc_model_gen.__main__.AnalyzeController'>][source]
label = 'rand_wc_model_gen'[source]
class rand_wc_model_gen.__main__.BaseController(*args, **kw)[source]

Bases: cement.ext.ext_argparse.ArgparseController

Base controller for command line application

class Meta[source]

Bases: object

arguments = [(['-v', '--version'], {'action': 'version', 'version': '0.0.1'})][source]
description = 'Random whole-cell model generator'[source]
label = 'base'[source]
class rand_wc_model_gen.__main__.GenerateController(*args, **kw)[source]

Bases: cement.ext.ext_argparse.ArgparseController

Generate a random whole-cell knowledge base and a random whole-cell model

class Meta[source]

Bases: object

arguments = [(['--config-path'], {'type': <class 'str'>, 'default': None, 'help': 'Path to configuration file'})][source]
description = 'Generate a random whole-cell knowledge base and a random whole-cell model'[source]
label = 'generate'[source]
stacked_on = 'base'[source]
stacked_type = 'nested'[source]
class rand_wc_model_gen.__main__.SimulateController(*args, **kw)[source]

Bases: cement.ext.ext_argparse.ArgparseController

Simulate a random whole-cell model

class Meta[source]

Bases: object

arguments = [(['--config-path'], {'type': <class 'str'>, 'default': None, 'help': 'Path to configuration file'}), (['--seed'], {'type': <class 'int'>, 'default': None, 'help': 'Random number generator seed'})][source]
description = 'Simulate a random whole-cell model'[source]
label = 'simulate'[source]
stacked_on = 'base'[source]
stacked_type = 'nested'[source]
rand_wc_model_gen.__main__.main()[source]

3.1.4. Module contents