3.1.1.2. datanator_query_python.config package

3.1.1.2.1. Submodules

3.1.1.2.2. datanator_query_python.config.config module

class datanator_query_python.config.config.AtlasConfig

Bases: object

AUTHDB = 'admin'

PASSWORD = 'B0Qu6x8AZsoRmfBb'

PORT = '27017'

PRODUCTION = 'True'

READ_PREFERENCE = 'nearest'

REPLSET = 'atlas-zap7lq-shard-0'

SERVER = 'datanator.9dv6u.mongodb.net'

USERNAME = 'restapi-1'

class datanator_query_python.config.config.Config

Bases: object

API for frontend with read permission to ‘datanator’

AUTHDB = 'admin'

PASSWORD = 'B0Qu6x8AZsoRmfBb'

PORT = '27017'

PRODUCTION = 'True'

READ_PREFERENCE = 'nearest'

REPLSET = 'atlas-zap7lq-shard-0'

SERVER = 'datanator.9dv6u.mongodb.net'

SESSION_KEY = '0dlGGQvSjts_GQ-r0VyJUQ'

USERNAME = 'restapi-1'

class datanator_query_python.config.config.DatanatorAdmin

Bases: datanator_query_python.config.config.Config

PASSWORD = '586389Lzymon'

USERNAME = 'mongo-admin'

class datanator_query_python.config.config.DatanatorTest

Bases: datanator_query_python.config.config.Config

PASSWORD = '3CTx99osSJmbW6pU'

USERNAME = 'datanator-test'

class datanator_query_python.config.config.FtxConfig

Bases: datanator_query_python.config.config.Config

Environment variables for AWS Elasticsearch service

FTX_AWS_PROFILE = 'FTX'

REST_FTX_AWS_PROFILE = 'REST_FTX'

TEST_FTX_PROFILE_NAME = 'mock'

class datanator_query_python.config.config.H1hescConfig

Bases: datanator_query_python.config.config.Config

config for h1_hesc package

Parameters

Config (Obj) – Config class.

H1_HESC_PASSWORD = 'kKWgLAG5Ul'

H1_HESC_USERNAME = 'h1-hesc'

class datanator_query_python.config.config.ProductionConfig

Bases: datanator_query_python.config.config.Config

PRODUCTION = True

class datanator_query_python.config.config.SchemaMigration

Bases: datanator_query_python.config.config.Config

PASSWORD = 'YbcupTkzgzyB2uDJ'

USERNAME = 'schema_migrator'

class datanator_query_python.config.config.TestConfig

Bases: datanator_query_python.config.config.Config

test user with read permission to ‘datanator’ and readWrite permission to ‘test’

PASSWORD = 'ljQ91yTMnC'

READ_PREFERENCE = 'primary'

USERNAME = 'querytest-0'

class datanator_query_python.config.config.UserAccountConfig

Bases: datanator_query_python.config.config.Config

API user account manager with readWrite permission to ‘registered_users’

USERDAEMON = 'restapi-user-daemon'

USERDAEMON_AUTHDB = 'registered_users'

USERDAEMON_PASSWORD = 'v9SdPYF5'

3.1.1.2.3. datanator_query_python.config.motor_client_manager module

3.1.1.2.4. datanator_query_python.config.query_manager module

class datanator_query_python.config.query_manager.FtxManager

Bases: object

ftx_manager()

class datanator_query_python.config.query_manager.KeggManager

Bases: object

kegg_manager()

class datanator_query_python.config.query_manager.Manager

Bases: object

eymdb_manager()

metabolite_concentration_manager()

protein_manager(database='datanator')

class datanator_query_python.config.query_manager.RnaManager

Bases: object

rna_manager(db='datanator')

class datanator_query_python.config.query_manager.RxnManager

Bases: object

rxn_manager()

class datanator_query_python.config.query_manager.TaxonManager

Bases: object

txn_manager()

datanator_query_python.config.query_manager.metabolites_meta_manager()

datanator_query_python.config.query_manager.uniprot_manager()

3.1.1.2.5. datanator_query_python.config.query_schema_2_manager module

class datanator_query_python.config.query_schema_2_manager.QM(server='datanator.9dv6u.mongodb.net', username='restapi-1', password='B0Qu6x8AZsoRmfBb', authSource='admin', replicaSet='atlas-zap7lq-shard-0', readPreference='nearest')

Bases: datanator_query_python.util.mongo_util.MongoUtil

conn_protein(db)

Establish connection with protein queries.

Parameters

• db (str) – name of database.

• collection (str) – name of collection.

Returns

(pymongo.database.Database)

3.1.1.2.6. Module contents