Index

A

append_taxon_distance() (in module datanator_rest_api.routes.rna) arguments (datanator_rest_api.__main__.BaseController.Meta attribute) (datanator_rest_api.__main__.Command3WithArgumentsController.Meta attribute)

arrange_distance_objs() (datanator_rest_api.util.taxon_distance.TaxonDist method) AutoResolver (class in datanator_rest_api.server.AutoResolver)

B

base_controller (datanator_rest_api.__main__.Cli.Meta attribute)

BaseController (class in datanator_rest_api.__main__) BaseController.Meta (class in datanator_rest_api.__main__)

C

canon_rank_common_distance (class in datanator_rest_api.routes.taxon) canon_rank_distance (class in datanator_rest_api.routes.taxon) canon_rank_distance_by_name (class in datanator_rest_api.routes.taxon) Cli (class in datanator_rest_api.__main__) Cli.Meta (class in datanator_rest_api.__main__) cmd1() (datanator_rest_api.__main__.BaseController method)

cmd2() (datanator_rest_api.__main__.BaseController method) Command3WithArgumentsController (class in datanator_rest_api.__main__) Command3WithArgumentsController.Meta (class in datanator_rest_api.__main__) concentration_only (class in datanator_rest_api.routes.metabolites) concentrations (class in datanator_rest_api.routes.metabolites) concentrations.similar_compounds (class in datanator_rest_api.routes.metabolites) create_app() (in module datanator_rest_api.core)

D

datanator_rest_api (module) datanator_rest_api.__main__ (module) datanator_rest_api._version (module) datanator_rest_api.core (module) datanator_rest_api.routes (module) datanator_rest_api.routes.ftx (module) datanator_rest_api.routes.kegg (module) datanator_rest_api.routes.metabolites (module) datanator_rest_api.routes.proteins (module) datanator_rest_api.routes.reactions (module) datanator_rest_api.routes.rna (module)

datanator_rest_api.routes.status (module) datanator_rest_api.routes.taxon (module) datanator_rest_api.server (module) datanator_rest_api.server.AutoResolver (module) datanator_rest_api.spec (module) datanator_rest_api.spec.SpecUtils (module) datanator_rest_api.util (module) datanator_rest_api.util.paginator (module) datanator_rest_api.util.taxon_distance (module) description (datanator_rest_api.__main__.BaseController.Meta attribute) (datanator_rest_api.__main__.Command3WithArgumentsController.Meta attribute)

G

get() (datanator_rest_api.routes.ftx.text_search method) (datanator_rest_api.routes.ftx.text_search.frontend_num_of_index method) (datanator_rest_api.routes.ftx.text_search.gene_ranked_by_ko method) (datanator_rest_api.routes.ftx.text_search.indices_in_page method) (datanator_rest_api.routes.ftx.text_search.num_of_index method) (datanator_rest_api.routes.kegg.get_meta method) (datanator_rest_api.routes.metabolites.concentration_only method) (datanator_rest_api.routes.metabolites.concentrations method) (datanator_rest_api.routes.metabolites.concentrations.similar_compounds method) (datanator_rest_api.routes.metabolites.meta method) (datanator_rest_api.routes.metabolites.summary.concentration_count method) (datanator_rest_api.routes.metabolites.summary.curated_ref_count method) (datanator_rest_api.routes.metabolites.summary.ecmdb_conc_count method) (datanator_rest_api.routes.metabolites.summary.ecmdb_doc_count method) (datanator_rest_api.routes.metabolites.summary.ecmdb_ref_count method) (datanator_rest_api.routes.metabolites.summary.get_distinct method) (datanator_rest_api.routes.metabolites.summary.ymdb_conc_count method) (datanator_rest_api.routes.metabolites.summary.ymdb_doc_count method) (datanator_rest_api.routes.metabolites.summary.ymdb_ref_count method) (datanator_rest_api.routes.proteins.meta.meta_combo method) (datanator_rest_api.routes.proteins.meta.meta_single method) (datanator_rest_api.routes.proteins.precise_abundance method) (datanator_rest_api.routes.proteins.proximity_abundance method) (datanator_rest_api.routes.proteins.proximity_abundance.proximity_abundance_kegg method) (datanator_rest_api.routes.proteins.related.related_reactions_by_kegg method) (datanator_rest_api.routes.proteins.related.related_reactions_by_uniprot method) (datanator_rest_api.routes.proteins.summary.num_abundances method) (datanator_rest_api.routes.proteins.summary.num_obs_abundances method) (datanator_rest_api.routes.proteins.summary.num_obs_modifications method) (datanator_rest_api.routes.proteins.summary.num_organism method) (datanator_rest_api.routes.proteins.summary.num_protein method) (datanator_rest_api.routes.proteins.summary.num_publications method) (datanator_rest_api.routes.reactions.kinlaw_by_name method) (datanator_rest_api.routes.reactions.kinlaw_by_rxn method) (datanator_rest_api.routes.reactions.kinlaw_doc method) (datanator_rest_api.routes.reactions.kinlaw_doc.with_prm method) (datanator_rest_api.routes.reactions.kinlaw_entry method) (datanator_rest_api.routes.reactions.summary.get_brenda_obs method) (datanator_rest_api.routes.reactions.summary.get_distinct method) (datanator_rest_api.routes.reactions.summary.get_frequency method) (datanator_rest_api.routes.reactions.summary.get_sabio_obs method) (datanator_rest_api.routes.reactions.summary.num_entries method) (datanator_rest_api.routes.reactions.summary.num_organism method) (datanator_rest_api.routes.reactions.summary.num_parameter_kcat method) (datanator_rest_api.routes.reactions.summary.num_parameter_km method) (datanator_rest_api.routes.reactions.summary.num_refs method) (datanator_rest_api.routes.rna.halflife.get_info_by_ko method) (datanator_rest_api.routes.rna.halflife.get_info_by_name method) (datanator_rest_api.routes.rna.halflife.get_info_by_uniprot method) (datanator_rest_api.routes.rna.modification.get_modifications_by_ko method) (datanator_rest_api.routes.rna.summary.get_distinct method) (datanator_rest_api.routes.rna.summary.get_publication_num method) (datanator_rest_api.routes.rna.summary.get_total_docs method) (datanator_rest_api.routes.rna.summary.get_total_halflife_obs method) (datanator_rest_api.routes.rna.summary.get_total_modifications method) (datanator_rest_api.routes.taxon.canon_rank_common_distance method) (datanator_rest_api.routes.taxon.canon_rank_distance method) (datanator_rest_api.routes.taxon.canon_rank_distance_by_name method) (datanator_rest_api.routes.taxon.is_child method) (datanator_rest_api.routes.taxon.summary.taxon_distribution method) (in module datanator_rest_api.routes) (in module datanator_rest_api.routes.metabolites) (in module datanator_rest_api.routes.proteins) (in module datanator_rest_api.routes.status)

get_dist_object() (datanator_rest_api.util.taxon_distance.TaxonDist method) get_kegg_meta() (in module datanator_rest_api.routes.reactions) (in module datanator_rest_api.routes.rna) get_meta (class in datanator_rest_api.routes.kegg)

H

halflife (class in datanator_rest_api.routes.rna) halflife.get_info_by_ko (class in datanator_rest_api.routes.rna)

halflife.get_info_by_name (class in datanator_rest_api.routes.rna) halflife.get_info_by_uniprot (class in datanator_rest_api.routes.rna) handlers (datanator_rest_api.__main__.Cli.Meta attribute)

I

is_child (class in datanator_rest_api.routes.taxon)

K

kinlaw_by_name (class in datanator_rest_api.routes.reactions) kinlaw_by_rxn (class in datanator_rest_api.routes.reactions)

kinlaw_doc (class in datanator_rest_api.routes.reactions) kinlaw_doc.with_prm (class in datanator_rest_api.routes.reactions) kinlaw_entry (class in datanator_rest_api.routes.reactions)

L

label (datanator_rest_api.__main__.BaseController.Meta attribute) (datanator_rest_api.__main__.Cli.Meta attribute) (datanator_rest_api.__main__.Command3WithArgumentsController.Meta attribute)

M

main() (in module datanator_rest_api.__main__) meta (class in datanator_rest_api.routes.metabolites) (class in datanator_rest_api.routes.proteins)

meta.meta_combo (class in datanator_rest_api.routes.proteins) meta.meta_single (class in datanator_rest_api.routes.proteins) modification (class in datanator_rest_api.routes.rna) modification.get_modifications_by_ko (class in datanator_rest_api.routes.rna)

P

page() (datanator_rest_api.util.paginator.Paginator method) Paginator (class in datanator_rest_api.util.paginator) parseAPI() (datanator_rest_api.spec.SpecUtils.SpecUtils static method) post() (in module datanator_rest_api.routes.metabolites) (in module datanator_rest_api.routes.proteins) (in module datanator_rest_api.routes.status)

precise_abundance (class in datanator_rest_api.routes.proteins) proximity_abundance (class in datanator_rest_api.routes.proteins) proximity_abundance.proximity_abundance_kegg (class in datanator_rest_api.routes.proteins) put() (in module datanator_rest_api.routes.metabolites) (in module datanator_rest_api.routes.proteins) (in module datanator_rest_api.routes.status)

R

related (class in datanator_rest_api.routes.proteins) related.related_reactions_by_kegg (class in datanator_rest_api.routes.proteins)

related.related_reactions_by_uniprot (class in datanator_rest_api.routes.proteins) resolve_operation_id_using_rest_semantics() (datanator_rest_api.server.AutoResolver.AutoResolver method)

S

SpecUtils (class in datanator_rest_api.spec.SpecUtils) stacked_on (datanator_rest_api.__main__.Command3WithArgumentsController.Meta attribute) stacked_type (datanator_rest_api.__main__.Command3WithArgumentsController.Meta attribute) summary (class in datanator_rest_api.routes.metabolites) (class in datanator_rest_api.routes.proteins) (class in datanator_rest_api.routes.reactions) (class in datanator_rest_api.routes.rna) (class in datanator_rest_api.routes.taxon) summary.concentration_count (class in datanator_rest_api.routes.metabolites) summary.curated_ref_count (class in datanator_rest_api.routes.metabolites) summary.ecmdb_conc_count (class in datanator_rest_api.routes.metabolites) summary.ecmdb_doc_count (class in datanator_rest_api.routes.metabolites) summary.ecmdb_ref_count (class in datanator_rest_api.routes.metabolites) summary.get_brenda_obs (class in datanator_rest_api.routes.reactions) summary.get_distinct (class in datanator_rest_api.routes.metabolites) (class in datanator_rest_api.routes.reactions) (class in datanator_rest_api.routes.rna) summary.get_frequency (class in datanator_rest_api.routes.reactions) summary.get_publication_num (class in datanator_rest_api.routes.rna)

summary.get_sabio_obs (class in datanator_rest_api.routes.reactions) summary.get_total_docs (class in datanator_rest_api.routes.rna) summary.get_total_halflife_obs (class in datanator_rest_api.routes.rna) summary.get_total_modifications (class in datanator_rest_api.routes.rna) summary.num_abundances (class in datanator_rest_api.routes.proteins) summary.num_entries (class in datanator_rest_api.routes.reactions) summary.num_obs_abundances (class in datanator_rest_api.routes.proteins) summary.num_obs_modifications (class in datanator_rest_api.routes.proteins) summary.num_organism (class in datanator_rest_api.routes.proteins) (class in datanator_rest_api.routes.reactions) summary.num_parameter_kcat (class in datanator_rest_api.routes.reactions) summary.num_parameter_km (class in datanator_rest_api.routes.reactions) summary.num_protein (class in datanator_rest_api.routes.proteins) summary.num_publications (class in datanator_rest_api.routes.proteins) summary.num_refs (class in datanator_rest_api.routes.reactions) summary.taxon_distribution (class in datanator_rest_api.routes.taxon) summary.ymdb_conc_count (class in datanator_rest_api.routes.metabolites) summary.ymdb_doc_count (class in datanator_rest_api.routes.metabolites) summary.ymdb_ref_count (class in datanator_rest_api.routes.metabolites)

T

TaxonDist (class in datanator_rest_api.util.taxon_distance) text_search (class in datanator_rest_api.routes.ftx) text_search.frontend_num_of_index (class in datanator_rest_api.routes.ftx)

text_search.gene_ranked_by_ko (class in datanator_rest_api.routes.ftx) text_search.indices_in_page (class in datanator_rest_api.routes.ftx) text_search.num_of_index (class in datanator_rest_api.routes.ftx)

U

uploadAPI() (datanator_rest_api.spec.SpecUtils.SpecUtils static method)

V

validateAPI() (datanator_rest_api.spec.SpecUtils.SpecUtils static method)

W

writeAPI() (datanator_rest_api.spec.SpecUtils.SpecUtils static method)