3.1.1.1. mycoplasma_pneumoniae.analysis package¶

3.1.1.1.1. Submodules¶

3.1.1.1.2. mycoplasma_pneumoniae.analysis.core module¶

Analyze knowledge base, model, and simulation results.

Author: Jonathan Karr <karr@mssm.edu>
Date: 2017-07-25
Copyright: 2018, Karr Lab
License: MIT

class mycoplasma_pneumoniae.analysis.core.AnalysisRunner(knowledge_base=None, model=None, sim_results_path=None, analyses=None, out_path=None, options=None)[source]¶

Bases: wc_analysis.core.AnalysisRunner

Run multiple analyses

DEFAULT_ANALYSES = (<class 'mycoplasma_pneumoniae.analysis.sim_results.SingleCellAnalysis'>,)[source]¶

3.1.1.1.3. mycoplasma_pneumoniae.analysis.kb module¶

Analyze knowledge base

Author: Jonathan Karr <karr@mssm.edu>
Date: 2017-07-25
Copyright: 2018, Karr Lab
License: MIT

class mycoplasma_pneumoniae.analysis.kb.TranscriptLengthAnalysis(knowledge_base, out_path=None, options=None)[source]¶

Bases: wc_analysis.core.KnowledgeBaseAnalysis

Analysis of the lengths of transcription units

run()[source]¶: Run the analysis

3.1.1.1.4. mycoplasma_pneumoniae.analysis.model module¶

Analyze model

Author: Jonathan Karr <karr@mssm.edu>
Date: 2017-07-25
License: MIT

3.1.1.1.5. mycoplasma_pneumoniae.analysis.sim_results module¶

Analyze simulation results

Author: Jonathan Karr <karr@mssm.edu>
Date: 2017-07-25
License: MIT

class mycoplasma_pneumoniae.analysis.sim_results.SingleCellAnalysis(sim_results_path, model=None, knowledge_base=None, out_path=None, options=None)[source]¶

Bases: wc_analysis.core.SimulationAnalysis

Analysis of the predicted dynamics of a single cell

run()[source]¶: Run the analysis