wc_analysis
0.0.1
1. Installation
2. API documentation
3. About
wc_analysis
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Index
Index
A
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C
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D
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F
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G
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K
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M
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O
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P
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R
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S
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U
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W
A
analyses (wc_analysis.core.AnalysisRunner attribute)
Analysis (class in wc_analysis.core)
AnalysisRunner (class in wc_analysis.core)
C
clean_and_validate_options() (wc_analysis.core.Analysis method)
(wc_analysis.core.AnalysisRunner method)
create_fig() (wc_analysis.core.Analysis method)
D
DEFAULT_ANALYSES (wc_analysis.core.AnalysisRunner attribute)
F
FbaModelAnalysis (class in wc_analysis.model.fba)
G
get_dead_end_species() (wc_analysis.model.fba.FbaModelAnalysis method)
get_digraph() (wc_analysis.model.fba.FbaModelAnalysis method)
get_inactive_rxns() (wc_analysis.model.fba.FbaModelAnalysis method)
get_rxn_gaps() (wc_analysis.model.fba.FbaModelAnalysis method)
K
knowledge_base (wc_analysis.core.AnalysisRunner attribute)
(wc_analysis.core.KnowledgeBaseAnalysis attribute)
(wc_analysis.core.ModelAnalysis attribute)
(wc_analysis.core.SimulationAnalysis attribute)
KnowledgeBaseAnalysis (class in wc_analysis.core)
M
model (wc_analysis.core.AnalysisRunner attribute)
(wc_analysis.core.ModelAnalysis attribute)
(wc_analysis.core.SimulationAnalysis attribute)
ModelAnalysis (class in wc_analysis.core)
O
options (wc_analysis.core.Analysis attribute)
(wc_analysis.core.AnalysisRunner attribute)
out_path (wc_analysis.core.Analysis attribute)
(wc_analysis.core.AnalysisRunner attribute)
P
path_bounds_analysis() (wc_analysis.model.fba.FbaModelAnalysis method)
R
run() (wc_analysis.core.Analysis method)
(wc_analysis.core.AnalysisRunner method)
(wc_analysis.model.fba.FbaModelAnalysis method)
S
show_or_save_fig() (wc_analysis.core.Analysis method)
sim_results_path (wc_analysis.core.AnalysisRunner attribute)
(wc_analysis.core.SimulationAnalysis attribute)
SimulationAnalysis (class in wc_analysis.core)
submodel (wc_analysis.model.fba.FbaModelAnalysis attribute)
U
unbounded_paths() (wc_analysis.model.fba.FbaModelAnalysis method)
W
wc_analysis (module)
wc_analysis._version (module)
wc_analysis.core (module)
wc_analysis.kb (module)
wc_analysis.model (module)
wc_analysis.model.fba (module)
wc_analysis.sim (module)