Index

_

__add__() (wc_utils.util.chem.core.EmpiricalFormula method) __contains__() (wc_utils.util.chem.core.EmpiricalFormula method) __div__() (wc_utils.util.chem.core.EmpiricalFormula method) __eq__() (wc_utils.util.stats.ExponentialMovingAverage method) (wc_utils.workbook.core.Formula method) (wc_utils.workbook.core.Row method) (wc_utils.workbook.core.Workbook method) (wc_utils.workbook.core.Worksheet method) __getattr__() (wc_utils.util.enumerate.CaseInsensitiveEnumMeta method) __getitem__() (wc_utils.util.enumerate.CaseInsensitiveEnumMeta method) (wc_utils.workbook.core.Row method) (wc_utils.workbook.core.Worksheet method) __hash__() (wc_utils.util.chem.core.EmpiricalFormula method) __iter__() (wc_utils.util.uniform_seq.UniformSequence method) __mul__() (wc_utils.util.chem.core.EmpiricalFormula method) __ne__() (wc_utils.util.stats.ExponentialMovingAverage method) (wc_utils.workbook.core.Row method) (wc_utils.workbook.core.Workbook method) (wc_utils.workbook.core.Worksheet method)

__next__() (wc_utils.util.uniform_seq.UniformSequence method) __setattr__() (wc_utils.util.misc.EnhancedDataClass method) __setitem__() (wc_utils.util.chem.core.EmpiricalFormula method) __str__() (wc_utils.config.core.ExtraValuesError method) (wc_utils.config.core.InvalidConfigError method) (wc_utils.debug_logs.core.DebugLogsManager method) (wc_utils.util.chem.core.EmpiricalFormula method) (wc_utils.workbook.core.RowDifference method) (wc_utils.workbook.core.WorkbookDifference method) (wc_utils.workbook.core.WorksheetDifference method) __sub__() (wc_utils.util.chem.core.EmpiricalFormula method) __truediv__() (wc_utils.util.chem.core.EmpiricalFormula method) _num_steps (wc_utils.util.uniform_seq.UniformSequence attribute) _start (wc_utils.util.uniform_seq.UniformSequence attribute) _step (wc_utils.util.uniform_seq.UniformSequence attribute)

A

ACCEPT (wc_utils.util.misc.DFSMAcceptor attribute) accepting_state (wc_utils.util.misc.DFSMAcceptor attribute) add_config_value() (wc_utils.util.environ.ConfigEnvDict method) add_value() (wc_utils.util.stats.ExponentialMovingAverage method) allowed_list_values (wc_utils.workbook.io.FieldValidation attribute) allowed_scalar_value (wc_utils.workbook.io.FieldValidation attribute) alpha (wc_utils.util.stats.ExponentialMovingAverage attribute) AltResourceName (class in wc_utils.config.core) any (wc_utils.workbook.io.FieldValidationType attribute) any_checker() (in module wc_utils.config.core) apply() (wc_utils.workbook.io.WorksheetValidation method)

apply_help_comment() (wc_utils.workbook.io.FieldValidation method) apply_validation() (wc_utils.workbook.io.FieldValidation method) are_terms_equivalent() (in module wc_utils.util.ontology.core) are_units_equivalent() (in module wc_utils.util.units) as_dict() (in module wc_utils.util.misc) assert_memory_less() (in module wc_utils.util.testing) assert_memory_less_equal() (in module wc_utils.util.testing) assert_value_equal() (in module wc_utils.util.types) assert_value_not_equal() (in module wc_utils.util.types) auto_filter (wc_utils.workbook.io.WorksheetStyle attribute) aws_bucket (wc_utils.quilt.QuiltManager attribute) aws_profile (wc_utils.quilt.QuiltManager attribute)

B

between (wc_utils.workbook.io.FieldValidationCriterion attribute)

blank_head_fill_fgcolor (wc_utils.workbook.io.WorksheetStyle attribute) branch (wc_utils.util.git.RepositoryMetadata attribute)

C

Cache (class in wc_utils.cache) camel_case_to_snake_case() (in module wc_utils.util.string) CaseInsensitiveEnum (class in wc_utils.util.enumerate) CaseInsensitiveEnumMeta (class in wc_utils.util.enumerate) cast_to_builtins() (in module wc_utils.util.types) cell_difference() (wc_utils.workbook.core.Row method) CellDifference (class in wc_utils.workbook.core) col_width (wc_utils.workbook.io.WorksheetStyle attribute) column (wc_utils.workbook.io.WorksheetValidationOrientation attribute) config (wc_utils.config.core.ExtraValuesError attribute) (wc_utils.config.core.InvalidConfigError attribute)

CONFIG (wc_utils.util.environ.ConfigEnvDict attribute) config() (wc_utils.quilt.QuiltManager method) ConfigEnvDict (class in wc_utils.util.environ) ConfigManager (class in wc_utils.config.core) ConfigPaths (class in wc_utils.config.core) ConfigurationError convert() (in module wc_utils.workbook.io) copytree_to_existing_destination() (in module wc_utils.util.files) criterion (wc_utils.workbook.io.FieldValidation attribute) custom (wc_utils.workbook.io.FieldValidationType attribute)

D

DATA_REPO (wc_utils.util.git.RepoMetadataCollectionType attribute) date (wc_utils.workbook.io.FieldValidationType attribute) DebugLogsManager (class in wc_utils.debug_logs.core) decimal (wc_utils.workbook.io.FieldValidationType attribute) deepcopy() (wc_utils.config.core.ConfigPaths method) default (wc_utils.config.core.ConfigPaths attribute) DEFAULT_DIRECTORY (wc_utils.cache.Cache attribute) default_mutable_params() (in module wc_utils.util.decorate_default_data_struct) delete_file_from_bucket() (wc_utils.quilt.QuiltManager method) delete_package() (wc_utils.quilt.QuiltManager method) delete_test_repo() (wc_utils.util.git.GitHubRepoForTests method) delete_trailing_blanks() (in module wc_utils.util.string) det_count_elements() (in module wc_utils.util.list)

det_dedupe() (in module wc_utils.util.list) det_find_dupes() (in module wc_utils.util.list) DFSMAcceptor (class in wc_utils.util.misc) dict_by_class() (in module wc_utils.util.list) DictUtil (class in wc_utils.util.dict) difference() (in module wc_utils.util.list) (wc_utils.workbook.core.Row method) (wc_utils.workbook.core.Workbook method) (wc_utils.workbook.core.Worksheet method) DO_NOT_PICKLE (wc_utils.util.misc.EnhancedDataClass attribute), [1] DOT (wc_utils.util.environ.ConfigEnvDict attribute) download_file_from_bucket() (wc_utils.quilt.QuiltManager method) download_package() (wc_utils.quilt.QuiltManager method) draw_molecule() (in module wc_utils.util.chem.marvin)

E

elements_to_str() (in module wc_utils.util.list) EmpiricalFormula (class in wc_utils.util.chem.core) EnhancedDataClass (class in wc_utils.util.misc) EnvironUtils (class in wc_utils.util.environ) error_message (wc_utils.workbook.io.FieldValidation attribute) error_title (wc_utils.workbook.io.FieldValidation attribute) error_type (wc_utils.workbook.io.FieldValidation attribute) ExcelReader (class in wc_utils.workbook.io)

ExcelWriter (class in wc_utils.workbook.io) exec_transition() (wc_utils.util.misc.DFSMAcceptor method) expand_dict() (wc_utils.util.dict.DictUtil static method) ExponentialMovingAverage (class in wc_utils.util.stats) export() (wc_utils.util.chem.core.OpenBabelUtils class method) extra_columns (wc_utils.workbook.io.WorksheetStyle attribute) extra_rows (wc_utils.workbook.io.WorksheetStyle attribute) ExtraValuesError

F

FAIL (wc_utils.util.misc.DFSMAcceptor attribute) fields (wc_utils.workbook.io.WorksheetValidation attribute) FieldValidation (class in wc_utils.workbook.io) FieldValidationCriterion (class in wc_utils.workbook.io) FieldValidationErrorType (class in wc_utils.workbook.io) FieldValidationType (class in wc_utils.workbook.io) filtered_dict() (wc_utils.util.dict.DictUtil static method) filtered_iteritems() (wc_utils.util.dict.DictUtil static method) finalize_workbook() (wc_utils.workbook.io.ExcelWriter method) (wc_utils.workbook.io.SeparatedValuesWriter method) (wc_utils.workbook.io.Writer method)

find_nth() (in module wc_utils.util.string) flatten_dict() (wc_utils.util.dict.DictUtil static method) font_family (wc_utils.workbook.io.WorksheetStyle attribute) font_size (wc_utils.workbook.io.WorksheetStyle attribute) Formula (class in wc_utils.workbook.core) formula (wc_utils.workbook.core.Formula attribute) from_dict() (wc_utils.debug_logs.config.LoggerConfigurator static method) from_yaml() (wc_utils.debug_logs.config.LoggerConfigurator static method)

G

geometric_iterator() (in module wc_utils.util.misc) get_aws_bucket_uri() (wc_utils.quilt.QuiltManager method) get_config() (in module wc_utils.config.core) (wc_utils.config.core.ConfigManager method) get_count_limited_class() (in module wc_utils.util.list) get_ema() (wc_utils.util.stats.ExponentialMovingAverage method) get_env_dict() (wc_utils.util.environ.ConfigEnvDict method) get_formula() (wc_utils.util.chem.core.OpenBabelUtils static method) get_full_package_id() (wc_utils.quilt.QuiltManager method) get_github_api_token() (wc_utils.util.git.GitHubRepoForTests static method) get_inchi() (wc_utils.util.chem.core.OpenBabelUtils class method) get_log() (wc_utils.debug_logs.core.DebugLogsManager method) get_major_micro_species() (in module wc_utils.util.chem.marvin) get_molecular_weight() (wc_utils.util.chem.core.EmpiricalFormula method) get_options() (wc_utils.workbook.io.FieldValidation method)

get_package_root() (wc_utils.config.core.AltResourceName static method) get_packages() (wc_utils.quilt.QuiltManager method) get_pathname() (wc_utils.util.misc.EnhancedDataClass static method) get_reader() (in module wc_utils.workbook.io) get_repo() (in module wc_utils.util.git) get_repo_metadata() (in module wc_utils.util.git) get_sheet_names() (wc_utils.workbook.io.ExcelReader method) (wc_utils.workbook.io.Reader method) (wc_utils.workbook.io.SeparatedValuesReader method) get_smiles() (wc_utils.util.chem.core.OpenBabelUtils class method) get_state() (wc_utils.util.misc.DFSMAcceptor method) get_subclasses() (in module wc_utils.util.types) get_superclasses() (in module wc_utils.util.types) get_unit_registry() (in module wc_utils.util.units) get_writer() (in module wc_utils.workbook.io) GitHubRepoForTests (class in wc_utils.util.git)

H

hash (wc_utils.quilt.QuiltManager attribute) hash_block_size (wc_utils.cache.Cache attribute) head_columns (wc_utils.workbook.io.WorksheetStyle attribute) head_row_fill_fgcolor (wc_utils.workbook.io.WorksheetStyle attribute)

head_row_fill_pattern (wc_utils.workbook.io.WorksheetStyle attribute) head_row_font_bold (wc_utils.workbook.io.WorksheetStyle attribute) head_rows (wc_utils.workbook.io.WorksheetStyle attribute) Hyperlink (class in wc_utils.workbook.io) hyperlinks (wc_utils.workbook.io.WorksheetStyle attribute)

I

i_row (wc_utils.workbook.io.Hyperlink attribute), [1] ignore_blank (wc_utils.workbook.io.FieldValidation attribute) indent_forest() (in module wc_utils.util.string) information (wc_utils.workbook.io.FieldValidationErrorType attribute) initialize() (wc_utils.util.rand.RandomStateManager class method) initialize_workbook() (wc_utils.workbook.io.ExcelReader method) (wc_utils.workbook.io.ExcelWriter method) (wc_utils.workbook.io.Reader method) (wc_utils.workbook.io.SeparatedValuesReader method) (wc_utils.workbook.io.SeparatedValuesWriter method) (wc_utils.workbook.io.Writer method)

input_message (wc_utils.workbook.io.FieldValidation attribute) input_title (wc_utils.workbook.io.FieldValidation attribute) instance() (wc_utils.util.rand.RandomStateManager class method) integer (wc_utils.workbook.io.FieldValidationType attribute) internet_connected() (in module wc_utils.util.misc) InvalidConfigError InvalidRandomStateException is_iterable() (in module wc_utils.util.types) is_sorted() (in module wc_utils.util.list) isclass() (in module wc_utils.util.misc) isclass_by_name() (in module wc_utils.util.misc)

L

length (wc_utils.workbook.io.FieldValidationType attribute) LIKELY_INITIAL_VOWEL_SOUNDS (wc_utils.util.misc.EnhancedDataClass attribute), [1] list (wc_utils.workbook.io.FieldValidationType attribute)

LoggerConfigurator (class in wc_utils.debug_logs.config) login() (wc_utils.quilt.QuiltManager method) logs (wc_utils.debug_logs.core.DebugLogsManager attribute) ltd() (wc_utils.util.rand.RandomState method)

M

make_temp_environ() (wc_utils.util.environ.EnvironUtils static method) make_test_repo() (wc_utils.util.git.GitHubRepoForTests method) maximum_scalar_value (wc_utils.workbook.io.FieldValidation attribute) memoize() (in module wc_utils.cache) (wc_utils.cache.Cache method)

merge_ranges (wc_utils.workbook.io.WorksheetStyle attribute) merged_head_fill_fgcolor (wc_utils.workbook.io.WorksheetStyle attribute) minimum_scalar_value (wc_utils.workbook.io.FieldValidation attribute) most_qual_cls_name() (in module wc_utils.util.misc) msg (wc_utils.config.core.ExtraValuesError attribute) (wc_utils.config.core.InvalidConfigError attribute)

N

namespace (wc_utils.quilt.QuiltManager attribute) nested_get() (wc_utils.util.dict.DictUtil static method) nested_in() (wc_utils.util.dict.DictUtil static method) nested_set() (wc_utils.util.dict.DictUtil static method)

next_float() (wc_utils.util.uniform_seq.UniformSequence method) none_to_empty() (in module wc_utils.util.decorate_default_data_struct) normalize_filename() (in module wc_utils.util.files) normalize_filenames() (in module wc_utils.util.files)

O

obj_to_str() (in module wc_utils.util.misc) OpenBabelUtils (class in wc_utils.util.chem.core)

OrderableNoneType (class in wc_utils.util.misc) orientation (wc_utils.workbook.io.WorksheetValidation attribute)

P

package (wc_utils.quilt.QuiltManager attribute) package_root (wc_utils.config.core.AltResourceName attribute) partition_nth() (in module wc_utils.util.string) password (wc_utils.quilt.QuiltManager attribute) path (wc_utils.quilt.QuiltManager attribute) (wc_utils.workbook.io.Reader attribute) (wc_utils.workbook.io.Writer attribute)

paths (wc_utils.config.core.ConfigManager attribute) prep_tmp_conf() (wc_utils.util.environ.ConfigEnvDict method) prepare_to_pickle() (wc_utils.util.misc.EnhancedDataClass method)

Q

QuiltManager (class in wc_utils.quilt)

quote() (in module wc_utils.util.misc)

R

RandomState (class in wc_utils.util.rand) RandomStateManager (class in wc_utils.util.rand) read() (in module wc_utils.workbook.io) read_cell() (wc_utils.workbook.io.ExcelReader method) (wc_utils.workbook.io.SeparatedValuesReader method) read_dataclass() (wc_utils.util.misc.EnhancedDataClass class method) read_worksheet() (wc_utils.workbook.io.ExcelReader method) (wc_utils.workbook.io.Reader method) (wc_utils.workbook.io.SeparatedValuesReader method) Reader (class in wc_utils.workbook.io) registry (wc_utils.quilt.QuiltManager attribute) remove_empty_final_cols() (wc_utils.workbook.core.Worksheet method) remove_empty_final_rows() (wc_utils.workbook.core.Worksheet method) remove_silently() (in module wc_utils.util.files) repo_suitability() (in module wc_utils.util.git) RepoMetadataCollectionType (class in wc_utils.util.git) RepositoryMetadata (class in wc_utils.util.git) reset() (wc_utils.util.misc.DFSMAcceptor method) resource_filename() (wc_utils.config.core.AltResourceName method)

result (wc_utils.config.core.InvalidConfigError attribute) revision (wc_utils.util.git.RepositoryMetadata attribute) rfind_nth() (in module wc_utils.util.string) round() (wc_utils.util.rand.RandomState method) round_binomial() (wc_utils.util.rand.RandomState method) round_direct() (in module wc_utils.util.misc) round_midpoint() (wc_utils.util.rand.RandomState method) round_poisson() (wc_utils.util.rand.RandomState method) round_quadratic() (wc_utils.util.rand.RandomState method) Row (class in wc_utils.workbook.core) row (wc_utils.workbook.io.WorksheetValidationOrientation attribute) row_height (wc_utils.workbook.io.WorksheetStyle attribute) RowDifference (class in wc_utils.workbook.core) rpartition_nth() (in module wc_utils.util.string) rtd() (wc_utils.util.rand.RandomState method) run() (wc_utils.util.misc.DFSMAcceptor method) (wc_utils.workbook.io.Reader method) (wc_utils.workbook.io.SeparatedValuesWriter method) (wc_utils.workbook.io.Writer method)

S

schema (wc_utils.config.core.ConfigPaths attribute) SCHEMA_REPO (wc_utils.util.git.RepoMetadataCollectionType attribute) semantically_equal() (wc_utils.util.misc.EnhancedDataClass method) SeparatedValuesReader (class in wc_utils.workbook.io) SeparatedValuesWriter (class in wc_utils.workbook.io) set_value() (wc_utils.util.dict.DictUtil static method) setup_logs() (wc_utils.debug_logs.core.DebugLogsManager method) show_dropdown (wc_utils.workbook.io.FieldValidation attribute)

show_error (wc_utils.workbook.io.FieldValidation attribute) show_input (wc_utils.workbook.io.FieldValidation attribute) sources (wc_utils.config.core.ExtraValuesError attribute) (wc_utils.config.core.InvalidConfigError attribute) start_state (wc_utils.util.misc.DFSMAcceptor attribute) state (wc_utils.util.misc.DFSMAcceptor attribute) std() (wc_utils.util.rand.RandomState method) stop (wc_utils.workbook.io.FieldValidationErrorType attribute)

T

temp_config_env() (wc_utils.util.environ.EnvironUtils static method) time (wc_utils.workbook.io.FieldValidationType attribute) tip (wc_utils.workbook.io.Hyperlink attribute) title_row_fill_fgcolor (wc_utils.workbook.io.WorksheetStyle attribute) title_row_fill_pattern (wc_utils.workbook.io.WorksheetStyle attribute) title_row_font_bold (wc_utils.workbook.io.WorksheetStyle attribute) title_rows (wc_utils.workbook.io.WorksheetStyle attribute)

to_string_sorted_by_key() (wc_utils.util.dict.DictUtil static method) transitions_dict (wc_utils.util.misc.DFSMAcceptor attribute) transpose() (in module wc_utils.util.list) truncate() (wc_utils.util.uniform_seq.UniformSequence static method) type (wc_utils.workbook.io.FieldValidation attribute) typed() (in module wc_utils.util.decorate_default_data_struct) TypesUtilAssertionError

U

UniformSequence (class in wc_utils.util.uniform_seq) upload_file_to_bucket() (wc_utils.quilt.QuiltManager method) upload_package() (wc_utils.quilt.QuiltManager method)

url (wc_utils.util.git.RepositoryMetadata attribute) (wc_utils.workbook.io.Hyperlink attribute) user (wc_utils.config.core.ConfigPaths attribute) username (wc_utils.quilt.QuiltManager attribute)

V

validate() (wc_utils.config.core.ConfigManager method) validate_dataclass_type() (wc_utils.util.misc.EnhancedDataClass method) validate_dataclass_types() (wc_utils.util.misc.EnhancedDataClass method)

validate_random_state() (in module wc_utils.util.rand) value (wc_utils.util.stats.ExponentialMovingAverage attribute) (wc_utils.workbook.core.Formula attribute)

W

warning (wc_utils.workbook.io.FieldValidationErrorType attribute) wc_utils (module) wc_utils._version (module) wc_utils.cache (module) wc_utils.config (module) wc_utils.config.core (module) wc_utils.data_logs (module) wc_utils.debug_logs (module) wc_utils.debug_logs.config (module) wc_utils.debug_logs.core (module) wc_utils.quilt (module) wc_utils.util (module) wc_utils.util.chem (module) wc_utils.util.chem.core (module) wc_utils.util.chem.marvin (module) wc_utils.util.decorate_default_data_struct (module) wc_utils.util.dict (module) wc_utils.util.enumerate (module) wc_utils.util.environ (module) wc_utils.util.files (module) wc_utils.util.git (module) wc_utils.util.list (module) wc_utils.util.misc (module) wc_utils.util.ontology (module) wc_utils.util.ontology.core (module) wc_utils.util.rand (module) wc_utils.util.stats (module)

wc_utils.util.string (module) wc_utils.util.testing (module) wc_utils.util.types (module) wc_utils.util.uniform_seq (module) wc_utils.util.units (module) wc_utils.workbook (module) wc_utils.workbook.core (module) wc_utils.workbook.io (module) weighted_mean() (in module wc_utils.util.stats) weighted_median() (in module wc_utils.util.stats) weighted_mode() (in module wc_utils.util.stats) weighted_percentile() (in module wc_utils.util.stats) Workbook (class in wc_utils.workbook.core) WorkbookDifference (class in wc_utils.workbook.core) WorkbookStyle (class in wc_utils.workbook.io) WorkbookValidation (class in wc_utils.workbook.io) Worksheet (class in wc_utils.workbook.core) WorksheetDifference (class in wc_utils.workbook.core) WorksheetStyle (class in wc_utils.workbook.io) WorksheetValidation (class in wc_utils.workbook.io) WorksheetValidationOrientation (class in wc_utils.workbook.io) write() (in module wc_utils.workbook.io) write_cell() (wc_utils.workbook.io.ExcelWriter method) write_dataclass() (wc_utils.util.misc.EnhancedDataClass class method) write_worksheet() (wc_utils.workbook.io.ExcelWriter method) (wc_utils.workbook.io.SeparatedValuesWriter method) (wc_utils.workbook.io.Writer method) Writer (class in wc_utils.workbook.io)

X

xls_workbook (wc_utils.workbook.io.ExcelReader attribute) (wc_utils.workbook.io.ExcelWriter attribute)