1. InstallationΒΆ

Below are instructions for installing the model on Ubuntu Linux.

  1. Install the dependencies

    • Python:

      apt-get install python python-pip

    • Git:

      apt-get install git

    • Gurobi

      1. Get a Gurobi license from http://www.gurobi.com. Gurobi provides free licenses for academic users.

      2. Install Gurobi:

        apt-get install
wget http://packages.gurobi.com/7.5/gurobi7.5.1_linux64.tar.gz
tar xvfz gurobi7.5.1_linux64.tar.gz
mv gurobi751 /opt/

      3. Use your license to activate Gurobi:

        /opt/gurobi751/linux64/bin/grbgetkey "<license>"

      4. Install the Python binding:

        cd /opt/gurobi751/linux64
python setup.py install

  2. Download the model:

    git clone https://github.com/KarrLab/h1_hesc.git

  3. Change to the directory with the model:

    cd /path/to/h1_hesc

  4. Install the model and all Python dependencies:

    pip install -r .circleci/requirements.txt
pip install -e .