5. Appendix: References


Neil Swainston, Kieran Smallbone, Hooman Hefzi, Paul D Dobson, Judy Brewer, Michael Hanscho, Daniel C Zielinski, Kok Siong Ang, Natalie J Gardiner, Jahir M Gutierrez, and others. Recon 2.2: from reconstruction to model of human metabolism. Metabolomics, 12(7):1–7, 2016.


Ines Thiele, Neil Swainston, Ronan MT Fleming, Andreas Hoppe, Swagatika Sahoo, Maike K Aurich, Hulda Haraldsdottir, Monica L Mo, Ottar Rolfsson, Miranda D Stobbe, and others. A community-driven global reconstruction of human metabolism. Nature Biotechnology, 31(5):419–425, 2013.


Ulrike Wittig, Maja Rey, Andreas Weidemann, Renate Kania, and Wolfgang Müller. SABIO-RK: an updated resource for manually curated biochemical reaction kinetics. Nucleic Acids Research, 46(D1):gkx1065, 2018.


Douglas H Phanstiel, Justin Brumbaugh, Craig D Wenger, Shulan Tian, Mitchell D Probasco, Derek J Bailey, Danielle L Swaney, Mark A Tervo, Jennifer M Bolin, Victor Ruotti, and others. Proteomic and phosphoproteomic comparison of human ES and iPS cells. Nature Methods, 8(10):821–827, 2011.


Mingcong Wang, Christina J Herrmann, Milan Simonovic, Damian Szklarczyk, and Christian Mering. Version 4.0 of PaxDb: protein abundance data, integrated across model organisms, tissues, and cell-lines. Proteomics, 15(18):3163–3168, 2015.


Jeffrey D Orth, Ines Thiele, and Bernhard Ø Palsson. What is flux balance analysis? Nature Biotechnology, 28(3):245–248, 2010.