Index

A

AnalysisRunner (class in mycoplasma_pneumoniae.analysis.core) AnalyzeController (class in mycoplasma_pneumoniae.__main__) AnalyzeController.Meta (class in mycoplasma_pneumoniae.__main__) App (class in mycoplasma_pneumoniae.__main__) App.Meta (class in mycoplasma_pneumoniae.__main__)

arguments (mycoplasma_pneumoniae.__main__.AnalyzeController.Meta attribute) (mycoplasma_pneumoniae.__main__.BaseController.Meta attribute) (mycoplasma_pneumoniae.__main__.GenerateModelController.Meta attribute) (mycoplasma_pneumoniae.__main__.RunController.Meta attribute) (mycoplasma_pneumoniae.__main__.SimulateModelController.Meta attribute)

B

base_controller (mycoplasma_pneumoniae.__main__.App.Meta attribute)

BaseController (class in mycoplasma_pneumoniae.__main__) BaseController.Meta (class in mycoplasma_pneumoniae.__main__)

D

DEFAULT_ANALYSES (mycoplasma_pneumoniae.analysis.core.AnalysisRunner attribute) description (mycoplasma_pneumoniae.__main__.AnalyzeController.Meta attribute) (mycoplasma_pneumoniae.__main__.BaseController.Meta attribute) (mycoplasma_pneumoniae.__main__.GenerateModelController.Meta attribute) (mycoplasma_pneumoniae.__main__.RunController.Meta attribute) (mycoplasma_pneumoniae.__main__.SimulateModelController.Meta attribute)

G

GenerateModelController (class in mycoplasma_pneumoniae.__main__) GenerateModelController.Meta (class in mycoplasma_pneumoniae.__main__)

get_config() (in module mycoplasma_pneumoniae.config.core) get_debug_logs_config() (in module mycoplasma_pneumoniae.config.core)

H

handlers (mycoplasma_pneumoniae.__main__.App.Meta attribute) help (mycoplasma_pneumoniae.__main__.AnalyzeController.Meta attribute) (mycoplasma_pneumoniae.__main__.BaseController.Meta attribute) (mycoplasma_pneumoniae.__main__.GenerateModelController.Meta attribute) (mycoplasma_pneumoniae.__main__.RunController.Meta attribute) (mycoplasma_pneumoniae.__main__.SimulateModelController.Meta attribute)

L

label (mycoplasma_pneumoniae.__main__.AnalyzeController.Meta attribute) (mycoplasma_pneumoniae.__main__.App.Meta attribute) (mycoplasma_pneumoniae.__main__.BaseController.Meta attribute) (mycoplasma_pneumoniae.__main__.GenerateModelController.Meta attribute) (mycoplasma_pneumoniae.__main__.RunController.Meta attribute) (mycoplasma_pneumoniae.__main__.SimulateModelController.Meta attribute)

M

main() (in module mycoplasma_pneumoniae.__main__) mycoplasma_pneumoniae (module) mycoplasma_pneumoniae.__main__ (module) mycoplasma_pneumoniae._version (module) mycoplasma_pneumoniae.analysis (module)

mycoplasma_pneumoniae.analysis.core (module) mycoplasma_pneumoniae.analysis.kb (module) mycoplasma_pneumoniae.analysis.model (module) mycoplasma_pneumoniae.analysis.sim_results (module) mycoplasma_pneumoniae.config (module) mycoplasma_pneumoniae.config.core (module)

R

run() (mycoplasma_pneumoniae.analysis.kb.TranscriptLengthAnalysis method) (mycoplasma_pneumoniae.analysis.sim_results.SingleCellAnalysis method)

RunController (class in mycoplasma_pneumoniae.__main__) RunController.Meta (class in mycoplasma_pneumoniae.__main__)

S

SimulateModelController (class in mycoplasma_pneumoniae.__main__) SimulateModelController.Meta (class in mycoplasma_pneumoniae.__main__) SingleCellAnalysis (class in mycoplasma_pneumoniae.analysis.sim_results) stacked_on (mycoplasma_pneumoniae.__main__.AnalyzeController.Meta attribute) (mycoplasma_pneumoniae.__main__.GenerateModelController.Meta attribute) (mycoplasma_pneumoniae.__main__.RunController.Meta attribute) (mycoplasma_pneumoniae.__main__.SimulateModelController.Meta attribute)

stacked_type (mycoplasma_pneumoniae.__main__.AnalyzeController.Meta attribute) (mycoplasma_pneumoniae.__main__.GenerateModelController.Meta attribute) (mycoplasma_pneumoniae.__main__.RunController.Meta attribute) (mycoplasma_pneumoniae.__main__.SimulateModelController.Meta attribute)

T

TranscriptLengthAnalysis (class in mycoplasma_pneumoniae.analysis.kb)