8. Appendix: Acronyms¶
- CI
continuous integration
- CPU
central processing unit
- DES
discrete event simulation
- FBA
flux balance analysis
- GPU
graphical processing unit
- hESC
human embryonic stem cell
- InChI
IUPAC International Chemical Identifier
- MIASE
Minimum Information About a Simulation Experiment
- ODE
ordinary differential equations
- PDE
partial differential equations
- PDES
parallel discrete event simulation
- PGDB
pathway genome database
- ROSS
Rensselaer’s Optimistic Simulation System
- SBML
Systems Biology Markup Language
- SED-ML
Simulation Experiment Description Markup Language
- SESSL
Simulation Experiment Specification via a Scala Layer
- SI
International System of Units
- SMILES
simplified molecular-input line-entry system
- SSA
Stochastic Simulation Algorithm
- SVG
Scalable Vector Graphics
- VCS
version control system
- WC
whole-cell