7.1.2.1.1.1.1. intro_to_wc_modeling.concepts_skills.software_engineering.databases package

7.1.2.1.1.1.1.1. Submodules

7.1.2.1.1.1.1.2. intro_to_wc_modeling.concepts_skills.software_engineering.databases.core module

Relational database tutorial

Author

Jonathan Karr <jonrkarr@gmail.com>

Date

2017-06-08

Copyright

2017, Karr Lab

License

MIT

class intro_to_wc_modeling.concepts_skills.software_engineering.databases.core.Compartment(**kwargs)[source]

Bases: sqlalchemy.ext.declarative.api.Base

Represents an compartment

name[source]

name

Type

str

name[source]
organism[source]
organism_id[source]
class intro_to_wc_modeling.concepts_skills.software_engineering.databases.core.Organism(**kwargs)[source]

Bases: sqlalchemy.ext.declarative.api.Base

Represents an organism

ncbi_id[source]

NCBI id

Type

int

name[source]

name

Type

str

name[source]
ncbi_id[source]
class intro_to_wc_modeling.concepts_skills.software_engineering.databases.core.Reaction(**kwargs)[source]

Bases: sqlalchemy.ext.declarative.api.Base

Represents a reaction

name[source]

name

Type

str

name[source]
species[source]
class intro_to_wc_modeling.concepts_skills.software_engineering.databases.core.Specie(**kwargs)[source]

Bases: sqlalchemy.ext.declarative.api.Base

Represents a species

name[source]

name

Type

str

compartment[source]
compartment_id[source]
name[source]
intro_to_wc_modeling.concepts_skills.software_engineering.databases.core.create_database()[source]
intro_to_wc_modeling.concepts_skills.software_engineering.databases.core.create_session(engine)[source]
intro_to_wc_modeling.concepts_skills.software_engineering.databases.core.edit_database(session)[source]
intro_to_wc_modeling.concepts_skills.software_engineering.databases.core.insert_records(session)[source]
intro_to_wc_modeling.concepts_skills.software_engineering.databases.core.main()[source]
intro_to_wc_modeling.concepts_skills.software_engineering.databases.core.query_database(session)[source]

7.1.2.1.1.1.1.3. Module contents